PeptideShaker 1.16.40


Sub category:Science

Rate 91% (Votes 4231)
  • .pkg
  • zurbz_PeptideShaker_1.16.40.pkg
  • 113459 KB
  • MD5
  • 1fa9ece9bd9996f586511259c921f410
  • .zip
  • 90767.2 KB
  • MD5
  • 536715d53d64e28741e0b3964ae50301
  • .dmg
  • mdg7e.PeptideShaker.1.16.40.dmg
  • 102113.1 KB
  • MD5
  • 3620927129b318443bf022703dddc110

Comments (9)


  • PeptideShaker is a search engine independent platform for interpretation of proteomics identification results from multiple search engines, currently supporting X!Tandem, MS-GF+, MS Amanda, OMSSA, MyriMatch, Comet, Tide, Mascot, Andromeda and mzIdentML. By combining the results from multiple search engines, while re-calculating PTM localization scores and redoing the protein inference, PeptideShaker attempts to give you the best possible understanding of your proteomics data! PeptideShaker currently supports nine different analysis tasks: - Overview: get a simple yet detailed overview of all the proteins, peptides and PSMs in your dataset. - Spectrum IDs: compare the search engine performance and see how the search engine results are combined. - Fractions: inspect from which fractions proteins and peptides are likely to come from. - Modifications: get a detailed view of the post-translational modifications in the dataset. - 3D Structure: map the detected peptides and modifications onto corresponding PDB structures. - GO Enrichment: perform GO enrichment and find enriched GO terms in your dataset. - Validation: inspect and fine tune the validation process. - QC Plots: examine the quality of the results with Quality Control plots. - Reshake PRIDE: re-analyze public datasets in PRIDE as if they were your own. All data can also easily be exported for follow up analysis in other tools.

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